Essays about: "Direct Coupling Analysis HP model proteins"

Found 2 essays containing the words Direct Coupling Analysis HP model proteins.

1. 1. Sequence Correlations in HP Model Proteins

   University essay from Lunds universitet/Beräkningsbiologi och biologisk fysik - Genomgår omorganisation; Lunds universitet/Institutionen för astronomi och teoretisk fysik - Genomgår omorganisation

   Author : Orestes Theodoridis; [2018]
   Keywords : Physics and Astronomy;

   Abstract : Amino acids that are in close contact in a protein structure tend to co-evolve, which gives rise to sequence correlations. Direct coupling analysis (DCA) is a method for predicting such contacts directly from sequence correlations, without assuming any prior knowledge of structures. READ MORE

3. 2. Testing Direct Coupling Analysis on HP Model Proteins

   University essay from Lunds universitet/Beräkningsbiologi och biologisk fysik - Genomgår omorganisation; Lunds universitet/Institutionen för astronomi och teoretisk fysik - Genomgår omorganisation

   Author : Mustafa Kadhim; [2018]
   Keywords : Direct Coupling Analysis HP model proteins; Physics and Astronomy;

   Abstract : Direct coupling analysis (DCA) models correlations in sets of related (homologous) protein sequences using a Potts-like spin model ansatz. From the couplings of the Potts model, derived by inverse statistical mechanics, residue-pair contacts in the 3D structure of the protein are predicted. READ MORE