Essays about: "Paired-end Reads"

Found 4 essays containing the words Paired-end Reads.

  1. 1. Whole genome assembly, annotation and bioinformatics analysis of streptococcus agalactiae isolated from cow suffering of mastitis

    University essay from SLU/Dept. of Animal Breeding and Genetics

    Author : Saima Zubair; [2010]
    Keywords : Streptococcus agalactiae; Next Generation Sequencing Technologies; Reference-guided Assembly; Mastitis; Horizontal Gene Transfer; Secretory Proteins;

    Abstract : Streptococcus agalactiae is an obligate parasite and contagious pathogen living within the epithelial cells lining of acini of the bovine udder, causing milk disease mastitis particularly subclinical mastitis in dairy cattle. This bacterial pathogen also causes infection in pre-milking heifers, as well as neonates. READ MORE

  3. 2. Bioinformatics analysis of whole genome resequencing data in the chicken

    University essay from SLU/Dept. of Animal Breeding and Genetics

    Author : Khurram Maqbool; [2010]
    Keywords : Next generation sequencing; structural variation; insertion; deletion; chicken;

    Abstract : One of the most important challenges in human medicine is the identification of genetic variants underlying complex diseases but we are still not able to assess the risk of disease by genetic profiling. Also, as the complete functional properties remain unknown for most genes it is very important to further functionally annotate genomes. READ MORE

  4. 3. Bioinformatics assembly and analysis and annotation of the Bacillus amyloliquefaciens strain 5036 genome

    University essay from SLU/Dept. of Animal Breeding and Genetics

    Author : Shahid Manzoor; [2010]
    Keywords : Bacillus amyloliquefaciens UCMB-5036; Rhizosphere; Colonization; PGPR; Next generation sequencing; Paired-end Reads; Mapping assembly; De novo assembly;

    Abstract : Plants are essential for both human and animal life, several agricultural practices have been adopted or are being developed in order to improve crop production by preventing or mitigating effects of biotic and abiotic stresses faced by plants. Biocontrol is a promising technique being cost effective, environment friendly and able to target pathogens difficult to control through traditional means. READ MORE

  5. 4. Whole genome assembly, annotation and bioinformatics analysis of Bacillus amyloliquefaciens strain UCMB5113"

    University essay from SLU/Dept. of Animal Breeding and Genetics

    Author : Adnan Niazi; [2010]
    Keywords : genome assembly; Bacillus amyloliquefaciens UCMB5113; plant growth and protection; bacterial biocontrol; antimicrobial genes;

    Abstract : Bacillus amyloliquefaciens strain UCMB5113 is a Gram negative rhizo-bacterium, that produces antimicrobial compounds and induce plant basal defense with unknown genetic mechanism that suppress soil-borne plants and pathogens. Paired-end reads of length 75 bp with insert size of ~230 bp were sequenced from the genome of UCMB5113 by Illumina multiplex technology. READ MORE