Essays about: "Trimmomatic"

Found 2 essays containing the word Trimmomatic.

  1. 1. Quality Control and Differential Analysis Tools for Sequencing Data with User-Friendly GUI Implementation Based on PySimpleGUI

    University essay from Högskolan i Skövde/Institutionen för biovetenskap

    Author : Mohit Bachan Singh Panwar; [2023]
    Keywords : ;

    Abstract : The paper details the development, implementation and assessment of a suite of bioinformatics tools, namely Adapter Trimmer, Quality Trimmer, Quality Filter  and two Differential Expression Analysis (DEA) tools based on existing libraries like edgeR via rpy2 and PyDESeq2. All these tools are unified within a consolodated graphical user interface (GUI), underscoring the focus on accessibility and user-centric design. READ MORE

  3. 2. Factors Affecting How Well Bacterial Whole Genome Sequencing Reads Assemble

    University essay from Uppsala universitet/Institutionen för medicinsk biokemi och mikrobiologi

    Author : Mustafa Linda; [2021]
    Keywords : WGS; NGS; Illumina; C; jejuni; SPAdes; FastQC; MultiQC; BWA; Kraken Krona; Trimmomatic;

    Abstract : Recently Whole Genome Sequencing (WGS) has become the new high-resolution tool used to trace the source of foodborne outbreaks. There are often only a few genetic differences that can distinguish closely related bacterial isolates, and variability in data quality between different laboratories may influence the results. READ MORE