Essays about: "sequence identity"

Showing result 11 - 15 of 23 essays containing the words sequence identity.

1. 11. Evaluation of de novo assembly using PacBio long reads

   University essay from Uppsala universitet/Institutionen för biologisk grundutbildning

   Author : Huiwen Che; [2016]
   Keywords : ;

   Abstract : New sequencing technologies show promise for the construction of complete and accurate genome sequences, by a process called de novo assembly that joins reads by overlap to longer contiguous sequences without the need for a reference genome. High-quality de novo assembly leads to better understanding in genetic variations. READ MORE

3. 12. Complete genome characterization of barley yellow dwarf virus-OYV

   University essay from SLU/Department of Plant Biology (from 140101)

   Author : Kanitha Sathees; [2016]
   Keywords : complete nucleotide sequence; genome organization; barley yellow dwarf virus-OYV BYDV-OYV ; Luteovirus; recombination;

   Abstract : Barley yellow dwarf-associated viruses (BYD-associated viruses) belong to the family Luteoviridae and are of high economical relevance for cultivation of cereals. BYD-associated viruses are phloem-restricted pathogens that cause yellowing and reddening of leaves, plant dwarfing and reduction in size and number of grains. READ MORE

4. 13. Sequence characterization of Barley yellow dwarf virus – OYV

   University essay from SLU/Department of Plant Biology (from 140101)

   Author : Kanitha Sathees; [2015]
   Keywords : Barley yellow dwarf virus-OYV BYDV-OYV ; sequences; virus taxonomy; genome organization; phylogenetic analysis;

   Abstract : Barley yellow dwarf (BYD)-associated viruses are economically important in a wide range of cereals and grasses worldwide. These viruses belong to family Luteoviridae and are efficiently transmitted by aphids in a circulative and non-propagative manner. BYD-associated viruses have a genome of single-stranded positive sense RNA (+ssRNA). READ MORE

5. 14. Automated protein-family classification based on hidden Markov models

   University essay from Uppsala universitet/Bioinformatik

   Author : Christoffer Frisk; [2015]
   Keywords : Hidden Markov model; sequence identity; cluster; automatic clustering;

   Abstract : The aim of the project presented in this paper was to investigate the possibility toautomatically sub-classify the superfamily of Short-chain Dehydrogenase/Reductases (SDR).This was done based on an algorithm previously designed to sub-classify the superfamily ofMedium-chain Dehydrogenase/Reductases (MDR). READ MORE

6. 15. Characterisation of Wheat dwarf virus isolates from the vector Psammotettix alienus

   University essay from SLU/Department of Plant Biology (from 140101)

   Author : Louise Lidemalm; [2013]
   Keywords : diversity; leafhopper; PCR; phylogenetic analysis; Psammotettix alienus; rolling circle amplification; sequence; vector; wheat; wheat dwarf disease; Wheat dwarf vector; whole genome amplification;

   Abstract : Wheat dwarf disease caused by Wheat dwarf virus (WDV) can cause a lot of damage in wheat fields by reduction of yield. WDV belongs to the genus Mastrevirus in the family of Geminiviridae and it is transmitted by the leafhopper Psammotettix alienus. READ MORE