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Showing result 1 - 5 of 7 essays matching the above criteria.

  1. 1. EVALUATING TRANSCRIPTOME ASSEMBLY POTENTIAL BY DIFFERENT DE NOVO SEQUENCE ASSEMBLER TYPES

    University essay from Högskolan i Skövde/Institutionen för biovetenskap

    Author : Luan Gardenalli; [2023]
    Keywords : ;

    Abstract : With the rise of NGS technologies, the transcriptomes of non-model organisms can be reconstructed even with the absence of a reference genome, using de novo assembly tools. There is a wide range of de novo assembly tools frequently being developed, however, there is a still a knowledge gap about the different effects and efficiency of different de novo assembly software types for RNA-seq assembly. READ MORE

  3. 2. Comparison of quality performance of whole genome sequencing analysis pipelines for foodborne pathogens

    University essay from Uppsala universitet/Molekylär evolution

    Author : Chelsea Ramsin; [2022]
    Keywords : ;

    Abstract : Campylobacter is the leading cause of gastroenteritis worldwide and in Sweden there areofficial programs for the surveillance of the bacteria. One important objective with foodbornepathogen surveillance is molecular typing. READ MORE

  4. 3. Factors Affecting How Well Bacterial Whole Genome Sequencing Reads Assemble

    University essay from Uppsala universitet/Institutionen för medicinsk biokemi och mikrobiologi

    Author : Mustafa Linda; [2021]
    Keywords : WGS; NGS; Illumina; C; jejuni; SPAdes; FastQC; MultiQC; BWA; Kraken Krona; Trimmomatic;

    Abstract : Recently Whole Genome Sequencing (WGS) has become the new high-resolution tool used to trace the source of foodborne outbreaks. There are often only a few genetic differences that can distinguish closely related bacterial isolates, and variability in data quality between different laboratories may influence the results. READ MORE

  5. 4. Deployment, verification, and optimization of algorithms for simultaneous task planning and allocation in dynamic environments.

    University essay from KTH/Skolan för industriell teknik och management (ITM)

    Author : Yucheng Zhao; [2021]
    Keywords : ;

    Abstract : With the upgrading of hardware such as sensors, processors, and artificial intelligence technologies, robotics technology is developing in the direction of intelligence. As multi-robot collaborative work is required in more and more scenarios, the robustness of multi-robot systems(MRS) against sensor errors, mapping errors, and dynamic obstacles is becoming a focus issue. READ MORE

  6. 5. Isolation and genomic characterization of three PHA degrading bacteria from the marine environment

    University essay from Lunds universitet/Bioteknik (master); Lunds universitet/Bioteknik (CI)

    Author : Giulia Elli; [2019]
    Keywords : PHA; degradation of PHA; marine bacteria; sulphate reducing bacteria; SRB; SRM; biotechnology; bioteknik; Technology and Engineering;

    Abstract : The broader goal of this project was to investigate what kind of effects the accumulation of polyhydroxyalkanoates (PHA) in the marine environment might have on the microbial world. Bacteria were isolated from biofilms fouling PHA pellets placed in the sediment-water interface; the goal was to isolate PHA degraders that were also sulphate reducers. READ MORE