Essays about: "Protein Language Model"

Found 4 essays containing the words Protein Language Model.

  1. 1. Exploring GPT models as biomedical knowledge bases : By evaluating prompt methods for extracting information from language models pre-trained on scientific articles

    University essay from KTH/Skolan för elektroteknik och datavetenskap (EECS)

    Author : Ebba Hellberg; [2023]
    Keywords : Language model; GPT; knowledge probing; information extraction; prompt methods; Språkmodell; GPT; kunskapsbas; informationsextraktion; prompt-metoder;

    Abstract : Scientific findings recorded in literature help continuously guide scientific advancements, but manual approaches to accessing that knowledge are insufficient due to the sheer quantity of information and data available. Although pre-trained language models are being explored for their utility as knowledge bases and structured data repositories, there is a lack of research for this application in the biomedical domain. READ MORE

  3. 2. Predicting Protein Stability with Machine Learning

    University essay from Lunds universitet/Biofysikalisk kemi

    Author : Lucas Carlsson; [2023]
    Keywords : Protein Stability; Biophysical Chemistry; Thermodynamics; Machine Learning; Deep Learning; Protein Language Model; Biochemistry; Multiple Sequence Alignment; Bioinformatics; Biology and Life Sciences;

    Abstract : Protein stability is a property of high importance and is of interest in a variety of fields. It determines if a protein has its native fold and can be of influence in certain diseases such as Parkinson's and Alzheimer's disease. READ MORE

  4. 3. Orbit-simulator for downstream processes

    University essay from Lunds universitet/Kemiteknik (CI)

    Author : Andreas Malmström; [2022]
    Keywords : Chemical engineering; Process simulation; Downstream processes; Orbit; Preparative chromatography; Python; Lumped Rate Models; Technology and Engineering;

    Abstract : In an ever more digitilized society, the transition is palpable also in the pharmaceutical industry. The control system Orbit was developed at the department of chemical engineering at Lund University, to be able to automate downstream processes based on the ÄKTA-system. READ MORE

  5. 4. Pre-training a knowledge enhanced model in biomedical domain for information extraction

    University essay from Uppsala universitet/Institutionen för lingvistik och filologi

    Author : Xi Yan; [2022]
    Keywords : bio-nlp; knowledge enhanced language model; pre-training; information extraction. transformer;

    Abstract : While recent years have seen a rise of research in knowledge graph enrichedpre-trained language models(PLM), few studies have tried to transfer the work to the biomedical domain. This thesis is a first attempt to pre-train a large-scalebiological knowledge enriched language model (KPLM). Under the frameworkof CoLAKE (T. Sun et al. READ MORE