Essays about: "Shotgun Sequencing Data"

Found 4 essays containing the words Shotgun Sequencing Data.

  1. 1. Archaeological dental calculus reveals patterns of dietary shifts related to the farming transition in Africa

    University essay from Uppsala universitet/Institutionen för biologisk grundutbildning

    Author : Ivany Jocelyne Argueta Mejia; [2023]
    Keywords : dental calculus; ancient DNA; oral microbiome; shotgun sequencing; biofilm; metagenomics;

    Abstract : Archaeological dental calculus represents a depositional environment that entraps oral microbes, and debris of dietary, environmental, and cultural material that entered the mouth throughout the host’s life. Hence, they represent valuable archives of information about the host’s lifestyle, health, and environment. READ MORE

  3. 2. Metagenomic analysis of Crohn’s Disease

    University essay from Uppsala universitet/Molekylär epidemiologi

    Author : Gustav Lennemyr Ahlström; [2022]
    Keywords : Metagenomics; Machine Learning; Microbiome; IBD; Human Health; AI; Crohn s Disease; Shotgun Sequencing Data; Data Analysis; Bioinformatics; MetaPhlAn3; Supervised ML; Mikrobiom; Crohn s Sjukdom; Bioinformatik;

    Abstract : Inflammatory Bowel Disease (IBD) is a chronic and incurable condition that is increasing inprevalence across the globe. This illness consist of two forms: Crohn’s Disease (CD) andUlcerative Colitis (UC). CD is characterised by a patch inflammation pattern across the gut anda multitude of different factors, such as diet. READ MORE

  4. 3. Identifying Mitochondrial Genomes in Draft Whole-Genome Shotgun Assemblies of Six Gymnosperm Species

    University essay from Stockholms universitet/Matematiska institutionen

    Author : Yrin Eldfjell; [2018]
    Keywords : machine-learning classification genome plant mitochondria svm contigs gymnosperm;

    Abstract : Sequencing efforts for gymnosperm genomes typically focus on nuclear and chloroplast DNA, with only three complete mitochondrial genomes published as of 2017. The availability of additional mitochondrial genomes would aid biological and evolutionary understanding of gymnosperms. Identifying mtDNA from existing whole genome sequencing (WGS) data (i. READ MORE

  5. 4. BACTpipe : Characterization of bacterial isolates based on whole-genome sequence data

    University essay from Högskolan i Skövde/Institutionen för biovetenskap

    Author : Sandra Álvarez-Carretero; [2016]
    Keywords : ;

    Abstract : The technological advances have led to faster and more cost-effective sequencing platforms, making it quicker and more affordable to generate genomic sequence data. For the study of bacterial genome, two main methods can be used, whole-genome sequencing and metagenomic shotgun sequencing, of which the first is the mostly used in the past years. READ MORE