Essays about: "protein contact prediction"

Found 4 essays containing the words protein contact prediction.

  1. 1. Understanding the correlation between molecular structure of chilled dairy creams and the risk of environmental stress cracking in Tetra Pak® carton packages

    University essay from Lunds universitet/Livsmedelsteknik och nutrition (master)

    Author : Alejandra Fernandez Castaneda; [2022]
    Keywords : Cream; microestructure; environmental stress cracking; food technology and nutrition; Agriculture and Food Sciences;

    Abstract : Multilayer food packaging are lined with an inner layer of plastic and has excellent barrier properties. However, plastics lose their mechanical properties after being exposed to certain conditions; the combination of factors generates failures in the material such as the appearance of cracks, this phenomenon is known as environmental stress cracking (ESC). READ MORE

  3. 2. Sequence Correlations in HP Model Proteins

    University essay from Lunds universitet/Beräkningsbiologi och biologisk fysik - Genomgår omorganisation; Lunds universitet/Institutionen för astronomi och teoretisk fysik - Genomgår omorganisation

    Author : Orestes Theodoridis; [2018]
    Keywords : Physics and Astronomy;

    Abstract : Amino acids that are in close contact in a protein structure tend to co-evolve, which gives rise to sequence correlations. Direct coupling analysis (DCA) is a method for predicting such contacts directly from sequence correlations, without assuming any prior knowledge of structures. READ MORE

  4. 3. Testing Direct Coupling Analysis on HP Model Proteins

    University essay from Lunds universitet/Beräkningsbiologi och biologisk fysik - Genomgår omorganisation; Lunds universitet/Institutionen för astronomi och teoretisk fysik - Genomgår omorganisation

    Author : Mustafa Kadhim; [2018]
    Keywords : Direct Coupling Analysis HP model proteins; Physics and Astronomy;

    Abstract : Direct coupling analysis (DCA) models correlations in sets of related (homologous) protein sequences using a Potts-like spin model ansatz. From the couplings of the Potts model, derived by inverse statistical mechanics, residue-pair contacts in the 3D structure of the protein are predicted. READ MORE

  5. 4. Protein contact prediction based on the Tiramisu deep learning architecture

    University essay from KTH/Skolan för elektroteknik och datavetenskap (EECS)

    Author : Nikos Tsardakas Renhuldt; [2018]
    Keywords : protein contact prediction; contact prediction; protein structure; deep learning; machine learning;

    Abstract : Experimentally determining protein structure is a hard problem, with applications in both medicine and industry. Predicting protein structure is also difficult. Predicted contacts between residues within a protein is helpful during protein structure prediction. READ MORE