Essays about: "DNABert"

Found 2 essays containing the word DNABert.

1. 1. Knowledge Distillation of DNABERT for Prediction of Genomic Elements

   University essay from KTH/Skolan för kemi, bioteknologi och hälsa (CBH)

   Author : Joana Palés Huix; [2022]
   Keywords : Knowledge distillation; Transformers; BERT; Genomics; Promoter identification; Explainability;

   Abstract : Understanding the information encoded in the human genome and the influence of each part of the DNA sequence is a fundamental problem of our society that can be key to unveil the mechanism of common diseases. With the latest technological developments in the genomics field, many research institutes have the tools to collect massive amounts of genomic data. READ MORE

3. 2. Exploring DeepSEA CNN and DNABERT for Regulatory Feature Prediction of Non-coding DNA

   University essay from KTH/Skolan för elektroteknik och datavetenskap (EECS)

   Author : Jacob Stachowicz; [2021]
   Keywords : Machine Learning; Computer Science; Bioinformatics; Genomics; Transformer; Natural Language Processing; Whole Genome Sequencing; Non-codingDNA; DeepSEA; CNN; DNABert; BERT; DanQ; Biomedical Science; Computational Biology; AuROC; AUPRC; Maskininlärning; Datavetenskap; Bioinformatik; Genomik; Transformer; Språkteknologi; Helgenomsekvensering; icke-kod DNA; DeepSEA; CNN; DNABert; BERT; DanQ; Biomedicinsk vetenskap; Beräkningsbiologi; AuROC; AUPRC;

   Abstract : Prediction and understanding of the regulatory effects of non-coding DNA is an extensive research area in genomics. Convolutional neural networks have been used with success in the past to predict regulatory features, making chromatin feature predictions based solely on non-coding DNA sequences. READ MORE