Word embeddings and Patient records : The identification of MRI risk patients

Abstract: Identification of risks ahead of MRI examinations is identified as a cumbersome and time-consuming process at the Linköping University Hospital radiology clinic. The hospital staff often have to search through large amounts of unstructured patient data to find information about implants. Word embeddings has been identified as a possible tool to speed up this process. The purpose of this thesis is to evaluate this method, and that is done by training a Word2Vec model on patient journal data and analyzing the close neighbours of key search words by calculating cosine similarity. The 50 closest neighbours of each search words are categorized and annotated as relevant to the task of identifying risk patients ahead of MRI examinations or not. 10 search words were explored, leading to a total of 500 terms being annotated. In total, 14 different categories were observed in the result and out of these 8 were considered relevant. Out of the 500 terms, 340 (68%) were considered relevant. In addition, 48 implant models could be observed which are particularly interesting because if a patient have an implant, hospital staff needs to determine it’s exact model and the MRI conditions of that model. Overall these findings points towards a positive answer for the aim of the thesis, although further developments are needed.